MIMYR: Generative modeling of missing tissue in spatial transcriptomics
Diffusion for tissue structure and transformers for gene expression.
Research Scientist / Engineer at Luma AI
Redwood City, CA
I work on multimodal foundation models, controllable video generation, and robot learning, spanning midtraining, post-training, and inference-time guidance. Previously, I worked at Microsoft Research and Genesis Therapeutics. I earned my MS in Machine Learning from Carnegie Mellon University.
Tools: Python, PyTorch, PyTorch Geometric, Hugging Face, NumPy, SciPy, scikit-learn.
Training-free conditioning for diffusion transformers, inference-time guidance, and sequential Monte Carlo for molecular generation.
May–Jul 2025
Built MIMYR for tissue structure and gene expression, and LLOKI for spatial transcriptomics integration using GNNs and optimal transport.
Sep 2024–Dec 2025
LLM agents with tool use and active RAG, RepoClassBench for code generation, and FiGURe for graph representation learning. Contributed to the second-place team in the NeurIPS 2023 LLM Efficiency Challenge.
Sep 2022–Jul 2024
Graph neural networks for quantum optimization; granted a patent.
Mar–Jun 2021
Carnegie Mellon University — MS in Machine Learning, 2025
BITS Pilani — BE in Computer Science, Minor in Physics, 2021
Diffusion for tissue structure and transformers for gene expression.
Ellie Haber, Ajinkya Deshpande, Jian Ma, Spencer Krieger
Ajinkya Deshpande*, Anmol Agarwal*, Shashank Shet*, Arun Iyer, Aditya Kanade, Ram Bairi, Suresh Parthasarathy
Ajinkya P. Deshpande*, Chanakya Ekbote*, Arun Iyer, Ramakrishna Bairi, Sundararajan Sellamanickam
Ajinkya Deshpande, Alexey Melnikov
* Equal contribution. Conference, workshop, and preprint venues are identified above.